CXX=g++
CXXFLAGS= -std=c++11 -O2 -DNDEBUG -DSEQAN_ENABLE_TESTING=0 -I /home/dima/development/seqan-trunk/core/include -I /home/dima/development/seqan-trunk/extras/include -I /home/dima/svn/include

all:
	$(CXX) $(CXXFLAGS) BWTandFM.cpp  -o FMIndex
.PHONY: clean
clean:
	rm -f FMIndex output.txt
